Track Descriptions & Citations

Tracks Built into this Server

A1. Tag Cluster (TC)
Tag Cluster. Its representation schemes are:
  1. Red tinged color, such as "RED" and "PINK", indicates that its representative tag is a CAGE tag.
  2. Strong color, such as "RED" and "BLACK", indicates that it contains 2 or more CAGE tags
  3. Large arrow indicate over 10 CAGE tags.

B1. Transcripts
Transcripts used in RTPS construction.

B2. Transcription factors
Transcripts curated as transcription factors, in RIKEN

B3. RIKEN imprinted transcripts
RIKEN clones listed in EICO DB.

B4. TU (Transcriptional Unit)
Transcriptional Unit. See PMID:12466851 and PMID:15533708

RIKEN 5'-EST, 3'-EST, and GenBank's EST



C4. 5'/3'-end boundary pairs
Comprehensive 5'/3'-end boundary set.

D1. Gene prediction
Predicted transcripts by genscan and geneid. See UCSC description for genscan, geneid, twinscan.

D2. CpG island
See UCSC description.

D3. Gap
Assemble gap. See UCSC description.

D4. Simple repeat
Repeat region detected by Tandem repeats finder(TRF). See UCSC description.

D5. Conserved Region (axtNet vs. Human)
No additional information available.

Core promoter elements (Bucher)
Core promoter elements including TATA box, CCAAT box, GC box, and initiator. They are computed by RIKEN based on Bucher's matrix.

Core promoter elements (EPD68)
Core promoter elements, TATA box. They are computed by RIKEN based on EPD Release 68.

Repeat masker
Repeat region detected by RepeatMasker. See UCSC description.

TransGenic Trap Library
TransGenic description.
TransGenic site TransGenic Inc..
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